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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59121661_59124083_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59121661 - 59124083
Intron Length:
2423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACAAT
U12 Branch Point Sequence:
TTTTCCTTACTT
Flanking Amino Acid:
STALELRPYELWNSSHLFPN
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
65.2
0.38
1.3
73.4
38.5
Major PPT
83
0.74
0.7
78.6
29.5
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
81.2
1.06
1.5
95.75
31

Associated Gene:

Gene:
SLC37A3
Ensembl Gene ID:
ENSAPLG00000016319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017033
59106651 - 59125231
18581