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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59124199_59125065_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59124199 - 59125065
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGAGAT
U12 Branch Point Sequence:
TTTGGCCAAACC
Flanking Amino Acid:
HVAVFLLTFFSYSLLHASRK
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.1
37.5
Major BPS
49.5
-0
1.3
46.4
47
Major PPT
86.5
0.82
0.9
84.9
29.9
Minor 5ss
41.8
-0.9
3.2
54.8
49.4
Minor BPS
45.6
-0.3
2.4
66.79
45

Associated Gene:

Gene:
SLC37A3
Ensembl Gene ID:
ENSAPLG00000016319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017033
59106651 - 59125231
18581