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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59128258_59130524_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59128258 - 59130524
Intron Length:
2267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAATC
5'SS Class:
major
3'SS Sequence:
GCCTTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATTAT
U12 Branch Point Sequence:
GTTCAATTATCT
Flanking Amino Acid:
GAANLVMMLIGNKSDSVDKR
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
71.6
38.4
Major BPS
64.6
0.36
1.1
55.7
39.9
Major PPT
71.3
0.48
1
74.7
34
Minor 5ss
36.8
-1.5
3.3
48.8
41.7
Minor BPS
48.7
-0
2
73.15
42.7

Associated Gene:

Gene:
RAB19
Ensembl Gene ID:
ENSAPLG00000016306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017013
59127239 - 59131685
4447