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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59136532_59137206_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59136532 - 59137206
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGCAC
5'SS Class:
major
3'SS Sequence:
GTTCATTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AGTCTGTTCATT
Flanking Amino Acid:
SAKQFESKIIKSCPECRITS
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
62.8
37.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.6
0.55
0.9
65.7
40.6
Minor 5ss
27.3
-2.6
3.2
33
36
Minor BPS
44.1
-0.3
2.3
63.81
41

Associated Gene:

Gene:
MKRN1
Ensembl Gene ID:
ENSAPLG00000016256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047163
59134695 - 59153896
19202
ENSAPLT00000029466
59134695 - 59153896
19202
ENSAPLT00000016961
59133154 - 59153896
20743