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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59138205_59144202_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59138205 - 59144202
Intron Length:
5998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TGTTGCTTACCA
Flanking Amino Acid:
FVPGQPYCGRAATSCTELPL
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
81.3
0.7
0.9
73.3
41.4
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
60.9
0.34
2.1
75.93
41.5

Associated Gene:

Gene:
MKRN1
Ensembl Gene ID:
ENSAPLG00000016256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029466
59134695 - 59153896
19202
ENSAPLT00000016961
59133154 - 59153896
20743
ENSAPLT00000047163
59134695 - 59153896
19202