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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59144445_59148666_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59144445 - 59148666
Intron Length:
4222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACT
Flanking Amino Acid:
RGCCAYGDHCRYEHTKPLIQ
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.4
0.68
0.8
78
35.9
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
72.4
0.78
1.3
83.79
37.4

Associated Gene:

Gene:
MKRN1
Ensembl Gene ID:
ENSAPLG00000016256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016961
59133154 - 59153896
20743
ENSAPLT00000047163
59134695 - 59153896
19202
ENSAPLT00000029466
59134695 - 59153896
19202