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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59172801_59173888_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59172801 - 59173888
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCTAGT
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GATCTATTAATG
Flanking Amino Acid:
TFGGVGRNLADCLSRLGLTP
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
68.9
43.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.2
0.68
0.8
77.9
36.6
Minor 5ss
36.5
-1.5
3
51.7
44.8
Minor BPS
51.5
-0
1.6
55.99
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016136
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016840
59160598 - 59182718
22121
ENSAPLT00000016835
59160579 - 59183718
23140