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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59173984_59175718_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59173984 - 59175718
Intron Length:
1735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTGC
5'SS Class:
major
3'SS Sequence:
CTCCTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
CCACTGGTAACT
Flanking Amino Acid:
ESILHYCQHMDMSTILQLER
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
66
40.7
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
77.6
0.62
0.8
76.1
32.5
Minor 5ss
39.6
-1.2
3
49.8
41.8
Minor BPS
41.1
-0.5
2.5
56.99
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016136
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016835
59160579 - 59183718
23140