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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59173984_59177558_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
59173984 - 59177558
Intron Length:
3575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTGC
5'SS Class:
major
3'SS Sequence:
GGATTTGCACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GACTCAG
U12 Branch Point Sequence:
GTGTCCTGGATT
Flanking Amino Acid:
ESILHYCQHMVSQFKEKLCR
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
66
40.7
Major BPS
48.2
-0.1
1.6
57.3
41.7
Major PPT
56.2
0.14
1.1
48.5
44.7
Minor 5ss
39.6
-1.2
3
49.8
41.8
Minor BPS
63.8
0.52
1.5
76.54
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016136
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016840
59160598 - 59182718
22121