Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59184403_59184517_F

Intron Information:

Intron Rank:

146347

Intron Class:

major

Intron Phase:

Intron Coordinates:

59184403 - 59184517

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GCCTCCCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACCAAA

U12 Branch Point Sequence:

ACGGCCTCCACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

74.6

37.4

Major BPS

44.9

-0.3

1.3

48.7

34.5

Major PPT

0.52

0.8

65.6

30.4

Minor 5ss

34.4

-1.8

3.2

45.9

42.3

Minor BPS

45.4

-0.3

2.1

52.39

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028848

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041801

59183854 - 59185815

1962

ENSAPLT00000039132

59183854 - 59185796

1943