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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59187140_59187904_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59187140 - 59187904
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAG
U12 Branch Point Sequence:
TTCTCCTTCTCT
Flanking Amino Acid:
ERELRKQGVRGSKMKFLHKK
Intron Amino Acid Position:
980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
49.4
-0
1.7
60.7
45.9
Major PPT
85.3
0.79
0.7
80.4
24.9
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
47.3
-0.1
3.6
83.49
43.8

Associated Gene:

Gene:
DENND2A
Ensembl Gene ID:
ENSAPLG00000015883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016601
59186719 - 59237779
51061