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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59188145_59188753_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59188145 - 59188753
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGCGC
5'SS Class:
major
3'SS Sequence:
GTCTTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTGTCCTCACTG
Flanking Amino Acid:
KEEGAVNGKQETSPLNEVVS
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
52
45.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
79.2
0.66
0.8
77
31.7
Minor 5ss
30
-2.3
3.3
33
42.3
Minor BPS
48.8
-0.2
1.9
54.94
46.7

Associated Gene:

Gene:
DENND2A
Ensembl Gene ID:
ENSAPLG00000015883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016601
59186719 - 59237779
51061