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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59190751_59196901_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
59190751 - 59196901
Intron Length:
6151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTCT
5'SS Class:
weak_major
3'SS Sequence:
GTTTATCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTTAT
U12 Branch Point Sequence:
CTTGGTTTATCT
Flanking Amino Acid:
RRVIFIADKLSTLSKCCHAT
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.2
63.4
43.7
Major BPS
63.5
0.34
1.4
57.4
49.1
Major PPT
82.9
0.74
0.9
73.8
41.4
Minor 5ss
53.5
0.12
2.8
74.9
41
Minor BPS
48.7
-0
2.1
70.73
46.8

Associated Gene:

Gene:
DENND2A
Ensembl Gene ID:
ENSAPLG00000015883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016601
59186719 - 59237779
51061