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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59202120_59202824_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59202120 - 59202824
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGTGC
5'SS Class:
major
3'SS Sequence:
TGTTCTCCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TAATTGGAAACA
Flanking Amino Acid:
PEVTQQFPLKLERSFKFMRE
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
62.6
38.6
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
75.9
0.58
0.8
74.4
30.8
Minor 5ss
37.7
-1.4
3.2
49.7
46.9
Minor BPS
40.2
-0.7
2.6
56.39
43

Associated Gene:

Gene:
DENND2A
Ensembl Gene ID:
ENSAPLG00000015883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016601
59186719 - 59237779
51061