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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59207366_59208961_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59207366 - 59208961
Intron Length:
1596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTGAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
GTTTGCTGAGCA
Flanking Amino Acid:
NGKRRRKIPKLVLKINAIYE
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
61.3
0.28
1
62
30.6
Major PPT
67.2
0.39
1.1
62.8
43
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
49.9
-0
2.1
69.35
42.6

Associated Gene:

Gene:
DENND2A
Ensembl Gene ID:
ENSAPLG00000015883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016601
59186719 - 59237779
51061