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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59209160_59212105_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59209160 - 59212105
Intron Length:
2946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCGA
5'SS Class:
major
3'SS Sequence:
CCTCCATTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TTCTCCTCCATT
Flanking Amino Acid:
TSSVPGTPTKLLSKPIFFRQ
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
61.9
44.3
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
78.3
0.64
0.8
68.9
36
Minor 5ss
32.6
-2
3
42.3
44.2
Minor BPS
58.7
0.36
2
79.83
42.7

Associated Gene:

Gene:
DENND2A
Ensembl Gene ID:
ENSAPLG00000015883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016601
59186719 - 59237779
51061