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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59212228_59215140_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59212228 - 59215140
Intron Length:
2913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGAGCT
5'SS Class:
major
3'SS Sequence:
CTTTTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
TCTGCACTTACA
Flanking Amino Acid:
SEENVYEDILDPPSKENPYE
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
63.4
41.5
Major BPS
61.4
0.28
1
53
33.7
Major PPT
85.5
0.8
0.8
80.7
31.4
Minor 5ss
31.2
-2.1
3.6
39.5
45.9
Minor BPS
44.7
-0.4
2.2
61.34
44.2

Associated Gene:

Gene:
DENND2A
Ensembl Gene ID:
ENSAPLG00000015883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016601
59186719 - 59237779
51061