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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59219174_59237748_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
59219174 - 59237748
Intron Length:
18575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
GAGCACAGAGCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
76.8
0.6
0.9
69.9
36.6
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
37.4
-0.9
1.8
42.69
37.2

Associated Gene:

Gene:
DENND2A
Ensembl Gene ID:
ENSAPLG00000015883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016601
59186719 - 59237779
51061