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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59239890_59241482_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59239890 - 59241482
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
TCTTTCCCAACC
Flanking Amino Acid:
EEFEKLMLQQIDLRYEARNL
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
65.8
0.36
1.7
78
30.8
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
55.7
0.16
1.9
70.95
40.3

Associated Gene:

Gene:
ADCK2
Ensembl Gene ID:
ENSAPLG00000015876
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016556
59238180 - 59247354
9175