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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59241612_59241898_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59241612 - 59241898
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTGTCTTTATTT
Flanking Amino Acid:
TSEVLVETFEESEPISRYLH
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.7
0.76
0.8
81.4
35
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
62.5
0.47
1.6
74.92
43

Associated Gene:

Gene:
ADCK2
Ensembl Gene ID:
ENSAPLG00000015876
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016556
59238180 - 59247354
9175