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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59244235_59245296_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59244235 - 59245296
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTTGCTGATTT
Flanking Amino Acid:
AVFTAVVQGQGERVAELILH
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
80.5
0.69
0.8
74.8
33.5
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
53.9
0.2
2.1
80.66
41.5

Associated Gene:

Gene:
ADCK2
Ensembl Gene ID:
ENSAPLG00000015876
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016556
59238180 - 59247354
9175