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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59245426_59245824_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59245426 - 59245824
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTGATCA
Flanking Amino Acid:
VRGNTIALGKLQVANLLSNV
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.8
1.13
0.7
81.1
32.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
24.2
-3
3.6
33.3
41.7
Minor BPS
60.1
0.31
1.7
75.5
36

Associated Gene:

Gene:
ADCK2
Ensembl Gene ID:
ENSAPLG00000015876
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016556
59238180 - 59247354
9175