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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59255687_59256558_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59255687 - 59256558
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAGT
5'SS Class:
major
3'SS Sequence:
TCCTTGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
CAGGCCTGGATT
Flanking Amino Acid:
EDKEVLDPKKSPQREPAHVT
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
69
41.8
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
79.8
0.67
0.8
72.5
37.7
Minor 5ss
33.5
-1.9
3.3
49.6
46.3
Minor BPS
48.6
-0
1.6
59.96
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016818
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047660
59250942 - 59260493
9552