About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59257919_59258850_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59257919 - 59258850
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTATT
5'SS Class:
major
3'SS Sequence:
TTTACTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCAAA
U12 Branch Point Sequence:
CATGCTTTACTC
Flanking Amino Acid:
YLGHVAQEVKGSRERFVIEF
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.2
81.8
38.5
Major BPS
52.6
0.06
1.4
62.7
41.6
Major PPT
79.5
0.66
0.8
74.6
30.5
Minor 5ss
45.8
-0.4
3
68.3
42.6
Minor BPS
50.1
-0
1.7
58.37
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016818
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047660
59250942 - 59260493
9552