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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59259029_59259211_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59259029 - 59259211
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTGTTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CAGTCTTTAACT
Flanking Amino Acid:
GSELPGWPLTHFPVCAWNPD
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
86.2
0.81
0.8
80.9
31.3
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
75.9
0.89
1.2
80.71
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016818
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047660
59250942 - 59260493
9552