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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59259304_59259680_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59259304 - 59259680
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGCGCT
5'SS Class:
major
3'SS Sequence:
CTTCCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTCT
U12 Branch Point Sequence:
TTCTTCTTCCGT
Flanking Amino Acid:
QPEVPGRVATAGSMPIPHAR
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.1
57.3
42
Major BPS
36.2
-0.8
4.3
65.7
43.2
Major PPT
79.3
0.66
0.7
69.9
30.9
Minor 5ss
32.9
-1.9
3.6
47.9
47.7
Minor BPS
39.2
-0.7
3.6
70.32
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016818
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047660
59250942 - 59260493
9552