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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59260285_59260394_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59260285 - 59260394
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GATATGGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
GGTGTGGTGACA
Flanking Amino Acid:
HMWHSSDMVLGHFPYPDPAA
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
58.5
40.7
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
63.5
0.3
1.1
54.6
45.4
Minor 5ss
26.3
-2.7
3.2
28.5
38.7
Minor BPS
38.9
-0.8
2.5
50.7
41

Associated Gene:

Gene:
NDUFB2
Ensembl Gene ID:
ENSAPLG00000017148
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038925
59255940 - 59260469
4530