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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59269319_59275549_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59269319 - 59275549
Intron Length:
6231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTTTC
5'SS Class:
major
3'SS Sequence:
CCTCCCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTTTTTAAACC
Flanking Amino Acid:
PKTPIQAGGYGEFAAFK*
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
69.6
37.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.8
0.65
0.7
71.9
26.3
Minor 5ss
38.4
-1.3
3.2
52.3
45
Minor BPS
57.2
0.21
1.7
64.58
42.1

Associated Gene:

Gene:
BRAF
Ensembl Gene ID:
ENSAPLG00000015187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015915
59269296 - 59329786
60491