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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59275158_59275549_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59275158 - 59275549
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTTTC
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATCAACT
Flanking Amino Acid:
PKTPIQAGGYVELIIKEHKA
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
69.6
37.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.8
0.92
0.7
88.9
28.1
Minor 5ss
38.4
-1.3
3.2
52.3
45
Minor BPS
61.4
0.43
2
87.17
37.6

Associated Gene:

Gene:
BRAF
Ensembl Gene ID:
ENSAPLG00000015187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033696
59274021 - 59329786
55766