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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59279571_59280310_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59279571 - 59280310
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCCTTCCTAATT
Flanking Amino Acid:
EQLSGSILWMAPEVIRMQDK
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
77.5
0.62
1
72.2
42.7
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
61.4
0.44
1.7
75.59
41.9

Associated Gene:

Gene:
BRAF
Ensembl Gene ID:
ENSAPLG00000015187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033696
59274021 - 59329786
55766
ENSAPLT00000015915
59269296 - 59329786
60491