Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59286250_59287018_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59286250 - 59287018

Intron Length:

769

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

CATTTATGTAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TCTTTCTTACTA

Flanking Amino Acid:

SSSSEDRNRMKTLGRRDSSD

Intron Amino Acid Position:

427

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.1

31.1

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

63.5

0.3

1.2

63.7

40.9

Minor 5ss

29.9

-2.3

3.3

42.5

Minor BPS

66.5

0.51

1.6

74.1

38.6

Associated Gene:

Gene:

BRAF

Ensembl Gene ID:

ENSAPLG00000015187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015915

59269296 - 59329786

60491

ENSAPLT00000033696

59274021 - 59329786

55766