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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59289973_59291382_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59289973 - 59291382
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTCT
U12 Branch Point Sequence:
TTCTCTCTAACA
Flanking Amino Acid:
IRDQGVRGEGAPLNQLMRCL
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
33.2
-1
4.2
59.6
46.8
Major PPT
80.8
0.69
0.8
77.2
30.1
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
69.6
0.61
1.6
79.78
36.5

Associated Gene:

Gene:
BRAF
Ensembl Gene ID:
ENSAPLG00000015187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015915
59269296 - 59329786
60491