Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59291420_59293094_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59291420 - 59293094

Intron Length:

1675

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTAATTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

INTIEPVNIDDLIRDQGVRG

Intron Amino Acid Position:

329

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

92.9

22.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

82.9

0.74

0.8

77.6

35.5

Minor 5ss

44.1

-0.6

2.9

65.1

39.1

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

BRAF

Ensembl Gene ID:

ENSAPLG00000015187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033696

59274021 - 59329786

55766

ENSAPLT00000015915

59269296 - 59329786

60491