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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59293255_59301369_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59293255 - 59301369
Intron Length:
8115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGACCT
5'SS Class:
major
3'SS Sequence:
CTTTGTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
TTTTCCTTGACT
Flanking Amino Acid:
YPSVPPSDSVGPSILPSPSP
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
61.7
42.9
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
85.4
0.8
0.8
83.9
31.1
Minor 5ss
40.3
-1.1
3.1
49.8
46
Minor BPS
94.4
1.48
0.6
103.7
17.4

Associated Gene:

Gene:
BRAF
Ensembl Gene ID:
ENSAPLG00000015187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033696
59274021 - 59329786
55766
ENSAPLT00000015915
59269296 - 59329786
60491