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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59377797_59433960_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59377797 - 59433960
Intron Length:
56164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TCTCTCTTATCC
Flanking Amino Acid:
DQELEELIAKGAIERCTYIK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
84.4
0.77
0.8
76.7
37.4
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
62.8
0.38
1.6
71.17
40.3

Associated Gene:

Gene:
TMEM178B
Ensembl Gene ID:
ENSAPLG00000023717
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024675
59377415 - 59569588
192174