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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59441480_59445635_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
59441480 - 59445635
Intron Length:
4156

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCCCTTCAG
5'SS Class:
weak_major
3'SS Sequence:
AGGCTGGAGGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCTAAT
U12 Branch Point Sequence:
TCTTGCAAAAGT
Flanking Amino Acid:
CLSLTTHSRWKLFLASLHSE
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.3
43.5
43.6
Major BPS
67
0.42
1.2
67.3
37.8
Major PPT
39.7
-0.6
1.7
31.6
40.7
Minor 5ss
19.4
-3.5
3.5
23.6
29.5
Minor BPS
43.6
-0.4
2.5
68.11
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024945
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036666
59441386 - 59446088
4703