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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59602154_59605591_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59602154 - 59605591
Intron Length:
3438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCCA
5'SS Class:
major
3'SS Sequence:
TTTTCTTATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTA
Flanking Amino Acid:
LRRAACQEAEVFGNQLIPSS
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
65.1
40.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78
0.63
1
83.9
30.3
Minor 5ss
31.1
-2.2
3.2
40.1
45.4
Minor BPS
73.2
0.72
1.5
82.59
32.6

Associated Gene:

Gene:
AGK
Ensembl Gene ID:
ENSAPLG00000014517
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015192
59597547 - 59627068
29522