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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59606957_59608358_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59606957 - 59608358
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATCACCTGAGTT
Flanking Amino Acid:
LSGLDVTVVKTDYEGQAKKL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.7
0.83
0.7
84.8
30
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
50.1
0.08
1.7
68.23
42.6

Associated Gene:

Gene:
AGK
Ensembl Gene ID:
ENSAPLG00000014517
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015192
59597547 - 59627068
29522