About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59611498_59613558_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59611498 - 59613558
Intron Length:
2061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
TLYPESTNQVQHITNATLAI
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
AGK
Ensembl Gene ID:
ENSAPLG00000014517
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015192
59597547 - 59627068
29522