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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59614508_59616573_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59614508 - 59616573
Intron Length:
2066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
TATCTCAGAAGT
Flanking Amino Acid:
SYRDAGAKASKYWYLGPLKT
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
89.9
0.9
0.7
88.2
29.1
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
46.5
-0.1
2
68.54
41.6

Associated Gene:

Gene:
AGK
Ensembl Gene ID:
ENSAPLG00000014517
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015192
59597547 - 59627068
29522