About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59618708_59619494_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59618708 - 59619494
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGTGG
5'SS Class:
major
3'SS Sequence:
TTCTGATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCCCTTTAATG
Flanking Amino Acid:
LRLYWSPPRKEIPQEAAPED
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.8
41.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.3
0.64
0.9
72.3
36.9
Minor 5ss
30
-2.3
3.3
37.8
47.1
Minor BPS
69.3
0.47
1.3
68.31
39.9

Associated Gene:

Gene:
AGK
Ensembl Gene ID:
ENSAPLG00000014517
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015192
59597547 - 59627068
29522