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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59619593_59620413_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59619593 - 59620413
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CATTTCTGAATC
Flanking Amino Acid:
ATQNRQLDLTRTEDFMDICI
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.8
44.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.7
0.56
1
73.5
41.9
Minor 5ss
36.1
-1.6
3.2
49.4
46.3
Minor BPS
63.2
0.39
1.4
67.88
37.9

Associated Gene:

Gene:
AGK
Ensembl Gene ID:
ENSAPLG00000014517
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015192
59597547 - 59627068
29522