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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5962112_5972885_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5962112 - 5972885
Intron Length:
10774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTATGTAAC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
CACCACTTAAAA
Flanking Amino Acid:
LLEFSNTEGHPGAFSEVVLA
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
65.3
40.6
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
90.7
0.92
0.6
89.3
19.6
Minor 5ss
44
-0.7
2.5
58.4
39.6
Minor BPS
49.8
-0
1.7
56.55
41.9

Associated Gene:

Gene:
CAMK1D
Ensembl Gene ID:
ENSAPLG00000005323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046776
5962032 - 6093404
131373