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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59630726_59631679_R

Intron Information:

Intron Rank:
142681
Intron Class:
major
Intron Phase:
Intron Coordinates:
59630726 - 59631679
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAATTTTG
5'SS Class:
major
3'SS Sequence:
TGTTTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCCTTGTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
71.6
40.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
86.5
0.82
0.7
80.7
31.4
Minor 5ss
43.4
-0.7
2.8
50.1
46.2
Minor BPS
48
-0
2.1
69.62
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041718
59630254 - 59632341
2088