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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59631772_59631856_R

Intron Information:

Intron Rank:
142682
Intron Class:
major
Intron Phase:
Intron Coordinates:
59631772 - 59631856
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGTGTACA
5'SS Class:
major
3'SS Sequence:
CTATTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCTATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
0.9
71.2
33.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
67.3
0.39
1
63.5
40.7
Minor 5ss
36.8
-1.5
2.5
39.8
40.9
Minor BPS
63.9
0.43
1.6
73.42
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041718
59630254 - 59632341
2088