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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59633605_59634733_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59633605 - 59634733
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
CTTTACCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
CTGACTTTACCC
Flanking Amino Acid:
CSSCEEDLFILFFMEQNNRI
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
65.3
39.1
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
80.6
0.69
0.8
73.4
31.4
Minor 5ss
35.6
-1.6
3.3
49.5
41.3
Minor BPS
54.3
0.11
1.7
62.27
43.6

Associated Gene:

Gene:
DENND11
Ensembl Gene ID:
ENSAPLG00000014033
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014612
59633409 - 59643121
9713