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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59634803_59635297_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59634803 - 59635297
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACACTA
5'SS Class:
major
3'SS Sequence:
TCCCTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTGCATTTAATC
Flanking Amino Acid:
KEKYRRLNDQRQMLMYSQEV
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
71.7
40.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.4
0.71
0.7
79.8
25.7
Minor 5ss
41.1
-1
3.2
56.8
47.3
Minor BPS
55.4
0.15
1.5
61.45
37.9

Associated Gene:

Gene:
DENND11
Ensembl Gene ID:
ENSAPLG00000014033
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014612
59633409 - 59643121
9713