About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59635449_59635609_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59635449 - 59635609
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CTGATTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTTCTCTGATTT
Flanking Amino Acid:
MLETEVSYVACTTEKIFEEK
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
72
0.5
1.1
68.7
41.9
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
49.8
0.06
1.7
69.64
41.7

Associated Gene:

Gene:
DENND11
Ensembl Gene ID:
ENSAPLG00000014033
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014612
59633409 - 59643121
9713