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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59636401_59641804_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
59636401 - 59641804
Intron Length:
5404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CATTCAGACTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
ACATTCAGACTT
Flanking Amino Acid:
RYMHFLENQVRHLCMCPCFT
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
58.4
0.19
1
55.5
39.1
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
42.7
-0.4
1.8
56.43
40.2

Associated Gene:

Gene:
DENND11
Ensembl Gene ID:
ENSAPLG00000014033
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014612
59633409 - 59643121
9713