About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59641964_59643026_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59641964 - 59643026
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACATTAACT
Flanking Amino Acid:
SGSHKIQSDFIYFRKGLCFG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
83.4
28
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.2
0.54
0.9
65.4
41.1
Minor 5ss
37.3
-1.4
2.9
50.4
39.3
Minor BPS
72.1
0.77
1.6
87.56
36.9

Associated Gene:

Gene:
DENND11
Ensembl Gene ID:
ENSAPLG00000014033
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014612
59633409 - 59643121
9713